PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g023610.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 172aa    MW: 19665.4 Da    PI: 9.4815
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g023610.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-052547123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C  +F+++  L  H+++H
  Sopen01g023610.1 25 YRCTTCRDVFTSSQGLAGHQNKH 47
                      9*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.85E-52452No hitNo description
PROSITE profilePS5015710.5752552IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MQQQPPTRGM DDQRIIPNPG GVWCYRCTTC RDVFTSSQGL AGHQNKHKSE GTWIRGAPHE  60
KFFCPSTELP ALYLQLGTRK STPTVLRGQG RFYHLRRRNQ TVYGPRRKPG RPWAALYEPQ  120
QTMVLQVAPV FEGASISALH IQDQNLFASR PNQLVEKTYI DDKEEIDLEL TL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM1D9Q21e-106M1D9Q2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000855391e-105(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6643821